Publications

You can view all papers published by cuBIC or browse by (recent) lab member.
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Journal papers (43)

D Kyrollos, B Reid, K Dick, JR Green, 2020. "RPmirDIP: Reciprocal Perspective Improves miRNATargeting Prediction", Scientific Reports , in press.
KK Biggar, F Charih, H Liu, YB Ruiz-Blanco, L Stalker, A Chopra, J Connolly, H Adhikary, K Frensemier, M Hoekstra, M Galka, Q Fang, C Wynder, WL Standford, JR Green, SS-C Li, 2020. "Proteome-wide Prediction of Lysine Methylation Leads to Identification of H2KB43 Methylation and Outlines the Potential of the Methyllysine Proteome", Cell Reports , in press.
M Lotfi Shahreza, N Ghadiri, JR Green, 2020. "A computational drug repositioning method applied to rare diseases: Adrenocortical carcinoma", Scientific Reports 10(8846), doi:10.1038/s41598-020-65658-x.
I Goswami, S Redpath, RG Langlois, JR Green, KS Kee, HEA White, 2020. "Whole-body vibration in neonatal transport: a review of current knowledge and future research challenges", Early Human Development , in press.
F Charih, M Bromwich, AE Mark, R Lefrançois, JR Green, 2020. "Data-Driven Audiogram Classification for Mobile Audiometry", Scientific Reports 10(3962), doi:10.1038/s41598-020-60898-3.
K Dick, B Samanfar, B Barnes, ER Cober, B Mimee, LH Tan, SJ Molnar, KK Biggar, A Golshani, F Dehne, JR Green, 2020. "PIPE4: Fast PPI Predictor for Comprehensive Inter- and Cross-Species Interactomes", Scientific Reports 10(1390), doi:10.1038/s41598-019-56895-w.
M Sheikh Hassani, JR Green, 2019. "A Semi-Supervised Machine Learning Framework for MicroRNA Classification", BMC Human Genomics 13-Sup1(43), doi:10.1186/s40246-019-0221-7.
M Sheikh Hassani, JR Green, 2019. "Multi-view Co-training for microRNA Prediction", Scientific Reports 9(10931), doi:10.1038/s41598-019-47399-8.
S Romero-Molina, YB Ruiz-Blanco, JR Green, E Sanchez-Garcia, 2019. "ProtDCal-Suite: A web server for the numerical codification and functional analysis of proteins", Protein Science 28(9):1734-1743, doi:10.1002/pro.3673.
RJ Peace, M Sheikh Hassani, JR Green, 2019. "miPIE: NGS-based Prediction of miRNA Using Integrated Evidence", Scientific Reports 9(1548), doi:10.1038/s41598-018-38107-z.

Conference papers (64)

Dosso Souley, S Aziz, S Nizami, C Aubertin, K Greenwood, J Harrold, JR Green, "Video-based Neonatal Motion Detection", IEEE Engineering in Medicine and Biology Conference - EMBC 2020 Montreal, Quebec, 20-24 July 2020
F Darwaish, R Selzler, A Law, E Chen, A Ibey, C Aubertin, K Greenwood, S Redpath, ADC Chan, JR Green, RG Langlois, "Preliminary Laboratory Vibration Testing of a Complete Neonatal Patient Transport System", IEEE Engineering in Medicine and Biology Conference - EMBC 2020 Montreal, Quebec, 20-24 July 2020
R Selzler, A Smith, F Charih, A Boyle, J Holly, C Bridgewater, M Besemann, D Curan, ADC Chan, JR Green, "Exploratory Analysis of Ultra-Short-Term Heart Rate Variability Features in Virtual Rehabilitation Sessions", IEEE International Symposium on Medical Measurements and Applications (MeMeA) Bari, Italy, 1-3 June 2020
S Aziz, Dosso Souley, S Nizami, K Greenwood, J Harrold, JR Green, "Detection of Neonatal Patient Motion Using a Pressure-Sensitive Mat", IEEE International Symposium on Medical Measurements and Applications (MeMeA) Bari, Italy, 1-3 June 2020
Dosso Souley, S Aziz, S Nizami, K Greenwood, J Harrold, JR Green, "Measuring Variability in Neonatal Face Tracking for Non-Contact Continuous Patient Monitoring", IEEE International Symposium on Medical Measurements and Applications (MeMeA) Bari, Italy, 1-3 June 2020
K Dick, F Charih, J Woo, JR Green, "Gas Prices of America: The Machine-Augmented Crowd-Sourcing Era", CRV 2020 Computer and Robot Vision Ottawa, Canada, 13-15 May 2020
JR Green, R Langlois, A Chan, R Selzler, F Darwaish, A Ibey, C Aubertin, K Greenwood, S Redpath, "Investigating Vibration Levels in a Neonatal Transport System", Can Med Biol Eng Conf (CMBEC42) Ottawa, Canada, 21-24 May 2019
H Hozayen, S Nizami, A Bekele, K Dick, JR Green, "Developing a Real-Time Patient Monitor Data Import System", National Conference on Undergraduate Research (NCUR2018) Edmond, Oklahoma, 4-7 Apr 2018
Hassani Sheikh, JR Green, "Active Learning for microRNA Prediction", IEEE International Conference on Bioinformatics and Biomedicine - BIBM2018 Madrid, Spain, 3-6 Dec 2018
A Bekele, J Samuel, S Nizami, A Basharat, PR Giffen, JR Green, "Ontology Driven Temporal Event Annotator mHealth Application Framework", CASCON 2018 Markham, Canada, 29-31 October 2018

Datasets

cuBIC takes great pride in sharing its data whenever possible. Please take a look at our datasets in our Dataverse portal.